Gene expression in 5 C. elegans strains x 3 RNAi treatments

Differential expression testing

Look up differential expression between any two strain/treatment groups

Choose groups to compare:
Group 1
...vs...
Group 2
Results from this comparison:

Overall differences based on strain or strain:treatment interaction?

Strain differences in CTR condition?
(from likelihood ratio test)
Differences in RNAi response across strains?
(from likelihood ratio test of strain:treatment interaction)

Other

Genome characteristics of this gene for aiding in interpretation

Citations and resources

About

This (Shiny) app written - and hopefully maintained - by Avery Davis Bell, NSF PRFB-funded postdoc in Annalise Paaby's lab. Updated 2023. For methodological details, see the writeup at bioRxiv.
This work is licensed under a Creative Commons Attribution 4.0 International License.